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Styrofoam Cup x Diesel Truck OG #3

RSP 12971

Grower: Team Elite Genetics

General Information

Sample Name
S X D #3 - 20231207
Accession Date
December 6, 2023
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.12%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0314
male female RSP12971

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)
PHL-2 c.2564T>A p.Phe855Tyr missense variant moderate contig2621 342607

IGV: Start, Jump

T/A
NGS:
0.064
C90:
0.732
PHL-2 c.2578T>A p.Leu860Ile missense variant moderate contig2621 342621

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.746
PHL-2 c.2756A>C p.Glu919Ala missense variant moderate contig2621 342799

IGV: Start, Jump

A/C
NGS:
0.064
C90:
0.675
PHL-2 c.2783G>A p.Ser928Asn missense variant moderate contig2621 342826

IGV: Start, Jump

G/A
NGS:
0.107
C90:
0.890
PHL-2 c.3209A>G p.Gln1070Arg missense variant moderate contig2621 343252

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.885
PHL-2 c.3467A>G p.Gln1156Arg missense variant moderate contig2621 343510

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.713
PHL-2 c.3552delG p.Lys1185fs frameshift variant high contig2621 343593

IGV: Start, Jump

CG/C
NGS:
0.004
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.186A>T p.Arg62Ser missense variant moderate contig380 288577

IGV: Start, Jump

T/A
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.358G>A p.Gly120Arg missense variant moderate contig97 242064

IGV: Start, Jump

G/A
NGS:
0.099
C90:
0.493
ELF3

UniProt

c.772A>G p.Ser258Gly missense variant moderate contig97 242478

IGV: Start, Jump

A/G
NGS:
0.112
C90:
0.000
ELF3

UniProt

c.812G>T p.Gly271Val missense variant moderate contig97 242518

IGV: Start, Jump

G/T
NGS:
0.000
C90:
0.000
ELF3

UniProt

c.1466G>A p.Ser489Asn missense variant moderate contig97 244297

IGV: Start, Jump

G/A
NGS:
0.123
C90:
0.000
ELF3

UniProt

c.1630A>G p.Thr544Ala missense variant moderate contig97 244461

IGV: Start, Jump

A/G
NGS:
0.103
C90:
0.545
ELF3

UniProt

c.1966C>G p.Pro656Ala missense variant moderate contig97 244797

IGV: Start, Jump

C/G
NGS:
0.123
C90:
0.632
ELF3

UniProt

c.2141C>G p.Pro714Arg missense variant moderate contig97 244972

IGV: Start, Jump

C/G
NGS:
0.088
C90:
0.335
ELF3

UniProt

c.2198G>T p.Arg733Leu missense variant moderate contig97 245029

IGV: Start, Jump

G/T
NGS:
0.125
C90:
0.531
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
EMF2

UniProt

c.1772A>G p.Gln591Arg missense variant moderate contig954 3059929

IGV: Start, Jump

A/G
NGS:
0.092
C90:
0.876
FLD

UniProt

c.2981T>C p.Met994Thr missense variant moderate contig1450 2044012

IGV: Start, Jump

A/G
NGS:
0.064
C90:
0.478
AAE1-3

UniProt

c.722G>A p.Arg241Lys missense variant moderate contig976 1083132

IGV: Start, Jump

C/T
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.659G>A p.Arg220Gln missense variant moderate contig976 1083195

IGV: Start, Jump

C/T
NGS:
0.077
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.188A>G p.Asn63Ser missense variant moderate contig976 1083887

IGV: Start, Jump

T/C
NGS:
0.077
C90:
0.000
PIE1-1

UniProt

c.1222C>G p.Gln408Glu missense variant moderate contig1225 2281482

IGV: Start, Jump

C/G
NGS:
0.096
C90:
0.852
PIE1-1

UniProt

c.6725C>T p.Ala2242Val missense variant moderate contig1225 2289290

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.737
PKSB-3

UniProt

c.1901C>G p.Ala634Gly missense variant moderate contig93 3340008

IGV: Start, Jump

C/G
NGS:
0.059
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
closely related moderately related distantly related
  1. 0.208 Styrofoam Cup x Diesel Truck OG 16 (RSP12972)
  2. 0.230 Pearadise x Pineapple Pez Melonade 6 (RSP12978)
  3. 0.230 Styrofoam Cup x Cuban Linx 6 (RSP12982)
  4. 0.231 Styrofoam Cup x Pineapple Pez Melonade 5 (RSP12979)
  5. 0.240 Styrofoam Cup x Pineapple Pez Melonade 3 (RSP12976)
  6. 0.247 SHERBERT (RSP11355)
  7. 0.248 Pearadise x Orange Juice 4 (RSP12975)
  8. 0.253 Styrofoam Cup x Cuban Linx 1 (RSP12984)
  9. 0.258 Styrofoam Cup x Cuban Linx 4 (RSP12970)
  10. 0.259 Styrofoam Cup x Fuzzy Melon 11 (RSP12983)
  11. 0.261 RKM-2018-008 (RSP11099)
  12. 0.262 Styrofoam Cup x Orange Juice 1 (RSP12980)
  13. 0.263 NSPM x NSPM (RSP11487)
  14. 0.264 Skywalker OG (RSP10837)
  15. 0.264 Blue Dream (RSP11007)
  16. 0.266 The Gift (RSP10988)
  17. 0.266 Blue Dream (RSP11009)
  18. 0.267 Styrofoam Cup x Orange Juice 5 (RSP12974)
  19. 0.268 JL Cross 26 (RSP11527)
  20. 0.268 Grape Jelly s (RSP12640)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
closely related moderately related distantly related
  1. 0.268 Skywalker OG (RSP10837)
  2. 0.274 The Gift (RSP10988)
  3. 0.294 RKM-2018-033 (RSP11125)
  4. 0.301 Hermaphrodite ResearchSample2 (RSP11050)
  5. 0.301 RKM-2018-034 (RSP11126)
  6. 0.310 Pie Hoe (RSP11073)
  7. 0.311 Gold Cracker (RSP11048)
  8. 0.311 RKM-2018-026 (RSP11118)
  9. 0.312 Liberty Haze (RSP11000)
  10. 0.317 Recon (RSP10755)
  11. 0.317 UP Sunrise (RSP10989)
  12. 0.319 Sour Raspberry (RSP10551)
  13. 0.320 RKM-2018-009 (RSP11100)
  14. 0.321 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.324 Skunk 18 (RSP11038)
  16. 0.326 Blue Dream (RSP11033)
  17. 0.326 RKM-2018-020 (RSP11112)
  18. 0.330 Blueberry Cheesecake (RSP10680)
  19. 0.332 Durban Poison (RSP11014)
  20. 0.332 RKM-2018-032 (RSP11124)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
closely related moderately related distantly related
  1. 0.477 Cherry Blossom (RSP11323)
  2. 0.475 Cherry Blossom (RSP11318)
  3. 0.457 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.454 Cherry Blossom (RSP11274)
  5. 0.454 Cherry Blossom (RSP11300)
  6. 0.454 Cherry Blossom (RSP11301)
  7. 0.453 Cherry Blossom (RSP11311)
  8. 0.453 AVIDEKEL 2 0 (RSP11174)
  9. 0.452 Unknown- Cherry Wine - 002 (RSP11269)
  10. 0.452 Cherry Blossom (RSP11328)
  11. 0.450 Cherry Blossom (RSP11312)
  12. 0.448 Cherry Blossom (RSP11298)
  13. 0.446 Tanao Sri 46 (RSP11486)
  14. 0.445 Cherry Blossom (RSP11309)
  15. 0.436 Unknown- Cherry Wine - 003 (RSP11270)
  16. 0.436 Cherry Blossom (RSP11325)
  17. 0.436 Cherry Blossom (RSP11306)
  18. 0.430 Cherry Blossom (RSP11322)
  19. 0.429 Cherry Blossom (RSP11331)
  20. 0.426 Cherry Blossom (RSP11302)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
closely related moderately related distantly related
  1. 0.431 Cbot-2019-005 (RSP11133)
  2. 0.417 Cbot-2019-001 (RSP11129)
  3. 0.409 JL yellow (RSP11075)
  4. 0.406 Cherry (RSP11143)
  5. 0.400 Cherry (RSP11142)
  6. 0.400 Carmagnola (RSP11037)
  7. 0.398 Feral (RSP10890)
  8. 0.395 Blueberry Cheesecake (RSP10672)
  9. 0.392 Cbot-2019-004 (RSP11132)
  10. 0.391 Monoica (RSP10241)
  11. 0.391 Santhica27 (RSP11047)
  12. 0.390 Fedora 17 (RSP10661)
  13. 0.389 RKM-2018-006 (RSP11097)
  14. 0.389 Carmagnola (RSP10979)
  15. 0.386 Tisza (RSP11044)
  16. 0.382 RKM-2018-031 (RSP11123)
  17. 0.380 RKM-2018-028 (RSP11120)
  18. 0.377 Tygra (RSP10667)
  19. 0.374 RKM-2018-018 (RSP11110)
  20. 0.374 Futura 75 (RSP10664)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346993
Overlapping SNPs:
58
Concordance:
36

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
d39b6f9934727ca2ca7849b8c0d8826cfaf0285187a0cb6858dc73b2b51e83b4
Stamping Certificate
Download PDF (39.4 KB)
SHASUM Hash
150c0bfcd6516ccb85169a04c5cac9cd45cc529997b128d255878ed05b261711
QR code for RSP12971

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